{ "cells": [ { "cell_type": "code", "execution_count": 2, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "Reading SB\n", "Length of SB: 16559\n", "Reading AFIB\n", "Length of AFIB: 9839\n", "Reading GSVT\n", "Length of GSVT: 948\n", "Reading SR\n", "Length of SR: 9720\n" ] } ], "source": [ "import pickle\n", "from matplotlib import pyplot as plt\n", "import wfdb\n", "# read pickle files and check len and print first record and first record keys\n", "\n", "path = \"C:/Studium/dsa/data\"\n", "#path = \"C:/Users/Nils/Documents/HS-Mannheim/0000_MASTER/DSA/EKG_Prog/data\"\n", "\n", "categories_dict = {\n", "'SB': [426177001],\n", "'AFIB': [164889003, 164890007],\n", "'GSVT': [426761007, 713422000, 233896004, 233897008, 713422000],\n", "'SR': [426783006, 427393009]\n", "}\n", "\n", "\n", "data = {}\n", "for cat_name in categories_dict.keys():\n", " print(f\"Reading {cat_name}\")\n", " with open(f'{path}/{cat_name}.pkl', 'rb') as f:\n", " records = pickle.load(f)\n", " data[cat_name] = records\n", " print(f\"Length of {cat_name}: {len(records)}\")" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Check for missing data in timeseries" ] }, { "cell_type": "code", "execution_count": 18, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "Missing timeseries in 0 records\n" ] } ], "source": [ "missing_timeseries = []\n", "for cat_name, records in data.items():\n", " for record in records:\n", " if len(record.p_signal) != 5000:\n", " missing_timeseries.append(record)\n", " print(f\"Missing timeseries in {record.record_name}\")\n", " #if record.comments[2]== '':\n", "print(f\"Missing timeseries in {len(missing_timeseries)} records\")" ] } ], "metadata": { "kernelspec": { "display_name": "Python 3", "language": "python", "name": "python3" }, "language_info": { "codemirror_mode": { "name": "ipython", "version": 3 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", "version": "3.10.4" } }, "nbformat": 4, "nbformat_minor": 2 }